Phytophthora Diversity in Pennsylvania Nurseries and Greenhouses Inferred from Clinical Samples Collected over Four Decades.
Identifieur interne : 000334 ( Main/Exploration ); précédent : 000333; suivant : 000335Phytophthora Diversity in Pennsylvania Nurseries and Greenhouses Inferred from Clinical Samples Collected over Four Decades.
Auteurs : Cody Molnar [États-Unis] ; Ekaterina Nikolaeva [États-Unis] ; Seonghwan Kim [États-Unis] ; Tracey Olson [États-Unis] ; Devin Bily [États-Unis] ; Jung-Eun Kim [États-Unis] ; Seogchan Kang [États-Unis]Source :
- Microorganisms [ 2076-2607 ] ; 2020.
Abstract
The increasing movement of exotic pathogens calls for systematic surveillance so that newly introduced pathogens can be recognized and dealt with early. A resource crucial for recognizing such pathogens is knowledge about the spatial and temporal diversity of endemic pathogens. Here, we report an effort to build this resource for Pennsylvania (PA) by characterizing the identity and distribution of Phytophthora species isolated from diverse plant species in PA nurseries and greenhouses. We identified 1137 Phytophthora isolates cultured from clinical samples of >150 plant species submitted to the PA Department of Agriculture for diagnosis from 1975 to 2019 using sequences of one or more loci and morphological characteristics. The three most commonly received plants were Abies, Rhododendron, and Pseudotsuga. Thirty-six Phytophthora species identified represent all clades, except 3 and 10, and included a distinct subgroup of a known species and a prospective new species. Prominent pathogenic species such as P. cactorum, P. cinnamomi, P. nicotianae, P. drechsleri, P. pini, P. plurivora, and P. sp. kelmania have been found consistently since 1975. One isolate cultured from Juniperus horizontalis roots did not correspond to any known species, and several other isolates also show considerable genetic variation from any authentic species or isolate. Some species were isolated from never-before-documented plants, suggesting that their host range is larger than previously thought. This survey only provides a coarse picture of historical patterns of Phytophthora encounters in PA nurseries and greenhouses because the isolation of Phytophthora was not designed for a systematic survey. However, its extensive temporal and plant coverage offers a unique insight into the association of Phytophthora with diverse plants in nurseries and greenhouses.
DOI: 10.3390/microorganisms8071056
PubMed: 32708553
PubMed Central: PMC7409235
Affiliations:
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type="state">Pennsylvanie</region><settlement type="city">University Park (Pennsylvanie)</settlement></placeName><orgName type="university">Université d'État de Pennsylvanie</orgName></affiliation></author><author><name sortKey="Nikolaeva, Ekaterina" sort="Nikolaeva, Ekaterina" uniqKey="Nikolaeva E" first="Ekaterina" last="Nikolaeva">Ekaterina Nikolaeva</name><affiliation wicri:level="2"><nlm:affiliation>Bureau of Plant Industry, Pennsylvania Department of Agriculture, Harrisburg, PA 17110, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Bureau of Plant Industry, Pennsylvania Department of Agriculture, Harrisburg, PA 17110</wicri:regionArea><placeName><region type="state">Pennsylvanie</region></placeName></affiliation></author><author><name sortKey="Kim, Seonghwan" sort="Kim, Seonghwan" uniqKey="Kim S" first="Seonghwan" last="Kim">Seonghwan Kim</name><affiliation wicri:level="2"><nlm:affiliation>Bureau of Plant Industry, Pennsylvania Department of Agriculture, Harrisburg, PA 17110, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Bureau of Plant Industry, Pennsylvania Department of Agriculture, Harrisburg, PA 17110</wicri:regionArea><placeName><region type="state">Pennsylvanie</region></placeName></affiliation></author><author><name sortKey="Olson, Tracey" sort="Olson, Tracey" uniqKey="Olson T" first="Tracey" last="Olson">Tracey Olson</name><affiliation wicri:level="2"><nlm:affiliation>Bureau of Plant Industry, Pennsylvania Department of Agriculture, Harrisburg, PA 17110, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Bureau of Plant Industry, Pennsylvania Department of Agriculture, Harrisburg, PA 17110</wicri:regionArea><placeName><region type="state">Pennsylvanie</region></placeName></affiliation></author><author><name sortKey="Bily, Devin" sort="Bily, Devin" uniqKey="Bily D" first="Devin" last="Bily">Devin Bily</name><affiliation wicri:level="2"><nlm:affiliation>Bureau of Plant Industry, Pennsylvania Department of Agriculture, Harrisburg, PA 17110, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Bureau of Plant Industry, Pennsylvania Department of Agriculture, Harrisburg, PA 17110</wicri:regionArea><placeName><region type="state">Pennsylvanie</region></placeName></affiliation></author><author><name sortKey="Kim, Jung Eun" sort="Kim, Jung Eun" uniqKey="Kim J" first="Jung-Eun" last="Kim">Jung-Eun Kim</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Pathology & Environmental Microbiology, Pennsylvania State University, University Park, PA 16802, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology & Environmental Microbiology, Pennsylvania State University, University Park, PA 16802</wicri:regionArea><placeName><region type="state">Pennsylvanie</region><settlement type="city">University Park 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type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The increasing movement of exotic pathogens calls for systematic surveillance so that newly introduced pathogens can be recognized and dealt with early. A resource crucial for recognizing such pathogens is knowledge about the spatial and temporal diversity of endemic pathogens. Here, we report an effort to build this resource for Pennsylvania (PA) by characterizing the identity and distribution of <i>Phytophthora</i> species isolated from diverse plant species in PA nurseries and greenhouses. We identified 1137 <i>Phytophthora</i> isolates cultured from clinical samples of >150 plant species submitted to the PA Department of Agriculture for diagnosis from 1975 to 2019 using sequences of one or more loci and morphological characteristics. The three most commonly received plants were <i>Abies</i>, <i>Rhododendron</i>, and <i>Pseudotsuga</i>. Thirty-six <i>Phytophthora</i> species identified represent all clades, except 3 and 10, and included a distinct subgroup of a known species and a prospective new species. Prominent pathogenic species such as <i>P. cactorum</i>, <i>P. cinnamomi</i>, <i>P. nicotianae</i>, <i>P. drechsleri</i>, <i>P. pini</i>, <i>P. plurivora</i>, and <i>P.</i> sp. <i>kelmania</i> have been found consistently since 1975. One isolate cultured from <i>Juniperus horizontalis</i> roots did not correspond to any known species, and several other isolates also show considerable genetic variation from any authentic species or isolate. Some species were isolated from never-before-documented plants, suggesting that their host range is larger than previously thought. This survey only provides a coarse picture of historical patterns of <i>Phytophthora</i> encounters in PA nurseries and greenhouses because the isolation of <i>Phytophthora</i> was not designed for a systematic survey. However, its extensive temporal and plant coverage offers a unique insight into the association of <i>Phytophthora</i> with diverse plants in nurseries and greenhouses.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">32708553</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>28</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Print">2076-2607</ISSN><JournalIssue CitedMedium="Print"><Volume>8</Volume><Issue>7</Issue><PubDate><Year>2020</Year><Month>Jul</Month><Day>16</Day></PubDate></JournalIssue><Title>Microorganisms</Title><ISOAbbreviation>Microorganisms</ISOAbbreviation></Journal><ArticleTitle><i>Phytophthora</i> Diversity in Pennsylvania Nurseries and Greenhouses Inferred from Clinical Samples Collected over Four Decades.</ArticleTitle><ELocationID EIdType="pii" ValidYN="Y">E1056</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.3390/microorganisms8071056</ELocationID><Abstract><AbstractText>The increasing movement of exotic pathogens calls for systematic surveillance so that newly introduced pathogens can be recognized and dealt with early. A resource crucial for recognizing such pathogens is knowledge about the spatial and temporal diversity of endemic pathogens. Here, we report an effort to build this resource for Pennsylvania (PA) by characterizing the identity and distribution of <i>Phytophthora</i> species isolated from diverse plant species in PA nurseries and greenhouses. We identified 1137 <i>Phytophthora</i> isolates cultured from clinical samples of >150 plant species submitted to the PA Department of Agriculture for diagnosis from 1975 to 2019 using sequences of one or more loci and morphological characteristics. The three most commonly received plants were <i>Abies</i>, <i>Rhododendron</i>, and <i>Pseudotsuga</i>. Thirty-six <i>Phytophthora</i> species identified represent all clades, except 3 and 10, and included a distinct subgroup of a known species and a prospective new species. Prominent pathogenic species such as <i>P. cactorum</i>, <i>P. cinnamomi</i>, <i>P. nicotianae</i>, <i>P. drechsleri</i>, <i>P. pini</i>, <i>P. plurivora</i>, and <i>P.</i> sp. <i>kelmania</i> have been found consistently since 1975. One isolate cultured from <i>Juniperus horizontalis</i> roots did not correspond to any known species, and several other isolates also show considerable genetic variation from any authentic species or isolate. Some species were isolated from never-before-documented plants, suggesting that their host range is larger than previously thought. This survey only provides a coarse picture of historical patterns of <i>Phytophthora</i> encounters in PA nurseries and greenhouses because the isolation of <i>Phytophthora</i> was not designed for a systematic survey. However, its extensive temporal and plant coverage offers a unique insight into the association of <i>Phytophthora</i> with diverse plants in nurseries and greenhouses.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Molnar</LastName><ForeName>Cody</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology & Environmental Microbiology, Pennsylvania State University, University Park, PA 16802, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nikolaeva</LastName><ForeName>Ekaterina</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Bureau of Plant Industry, Pennsylvania Department of Agriculture, Harrisburg, PA 17110, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kim</LastName><ForeName>Seonghwan</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Bureau of Plant Industry, Pennsylvania Department of Agriculture, Harrisburg, PA 17110, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Olson</LastName><ForeName>Tracey</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Bureau of Plant Industry, Pennsylvania Department of Agriculture, Harrisburg, PA 17110, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bily</LastName><ForeName>Devin</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Bureau of Plant Industry, Pennsylvania Department of Agriculture, Harrisburg, PA 17110, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kim</LastName><ForeName>Jung-Eun</ForeName><Initials>JE</Initials><Identifier Source="ORCID">0000-0002-5173-9134</Identifier><AffiliationInfo><Affiliation>Department of Plant Pathology & Environmental Microbiology, Pennsylvania State University, University Park, PA 16802, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kang</LastName><ForeName>Seogchan</ForeName><Initials>S</Initials><Identifier Source="ORCID">0000-0003-2291-5634</Identifier><AffiliationInfo><Affiliation>Department of Plant Pathology & Environmental Microbiology, Pennsylvania State University, University Park, PA 16802, USA.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>ME44176532</GrantID><Agency>PA Specialty Crop Block Grant program</Agency><Country></Country></Grant><Grant><GrantID>M44420</GrantID><Agency>PA Specialty Crop Block Grant program</Agency><Country></Country></Grant><Grant><GrantID>AES 4686</GrantID><Agency>USDA McIntire-Stennis program</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>07</Month><Day>16</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Microorganisms</MedlineTA><NlmUniqueID>101625893</NlmUniqueID><ISSNLinking>2076-2607</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Phytophthora</Keyword><Keyword MajorTopicYN="N">diagnosis</Keyword><Keyword MajorTopicYN="N">pathogen survey</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2020</Year><Month>05</Month><Day>31</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2020</Year><Month>06</Month><Day>29</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>07</Month><Day>02</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>7</Month><Day>26</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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Kim</name><name sortKey="Kim, Seonghwan" sort="Kim, Seonghwan" uniqKey="Kim S" first="Seonghwan" last="Kim">Seonghwan Kim</name><name sortKey="Nikolaeva, Ekaterina" sort="Nikolaeva, Ekaterina" uniqKey="Nikolaeva E" first="Ekaterina" last="Nikolaeva">Ekaterina Nikolaeva</name><name sortKey="Olson, Tracey" sort="Olson, Tracey" uniqKey="Olson T" first="Tracey" last="Olson">Tracey Olson</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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|area= PhytophthoraV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:32708553
|texte= Phytophthora Diversity in Pennsylvania Nurseries and Greenhouses Inferred from Clinical Samples Collected over Four Decades.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:32708553" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PhytophthoraV1
| This area was generated with Dilib version V0.6.38. |  |